Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
results
•
reset
1
vote
1
reply
408
views
HISAT2 mapping
hisat2
results
updated 8 months ago by
ATpoint
★ 3.6k • written 8 months ago by
ali
• 0
0
votes
1
reply
1.4k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 13 months ago by
Michael Love
41k • written 14 months ago by
Chiara
• 0
1
vote
2
replies
2.7k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
2.8 years ago
james
• 0
3
votes
6
replies
1.9k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
paula.vaccarello
• 0
2
votes
2
replies
720
views
DESeq results gives all genes
deseq2
design matrix
results
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
evocanres
• 0
0
votes
1
reply
798
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
batmaiden
• 0
0
votes
3
replies
933
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
jan.soderman
• 0
1
vote
3
replies
859
views
Results counts post DESeq same raw counts
DESeq2
results
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
A
▴ 40
0
votes
0
replies
682
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
5.7 years ago
414457044
• 0
0
votes
5
replies
1000
views
results {DESeq2} parameters
deseq2
results
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
Aurora
▴ 20
2
votes
5
replies
1.4k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 6.1 years ago by
Michael Love
41k • written 6.7 years ago by
tarun2
• 0
2
votes
4
replies
1.2k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 6.1 years ago by
Steve Lianoglou
13k • written 6.1 years ago by
kritikamish99
▴ 10
3
votes
2
replies
3.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
6.1 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.2k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
4.8k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
courtney.stairs
• 0
2
votes
5
replies
2.8k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
bhgyu
▴ 30
1
vote
6
replies
1.8k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 6.7 years ago by
Michael Love
41k • written 6.7 years ago by
wariobrega
• 0
4
votes
4
replies
1.7k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
7.5 years ago
koeniger
▴ 10
5
votes
6
replies
17k
views
Group comparison in DESeq2
deseq2
results
updated 8.3 years ago by
Michael Love
41k • written 8.3 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
4.6k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.3 years ago by
Michael Love
41k • written 8.3 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
1.9k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.4k
views
limma multiple rows per gene in output (write.fit)
limma
results
8.5 years ago
Anne
• 0
2
votes
15
replies
2.8k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
8.7 years ago • updated 8.6 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Gordon Smyth
49k
515 samples is certainly large enough.
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
• 0
Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
SamGG
▴ 320
Gordon said to let coef to its default value: topTable(fit, n=20)
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
• 0
Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
samagbeyimodupe
• 0
Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…
Votes
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Answer: Correct the batch effect in methylation analysis in R
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Awards
• All
Scholar
to
Gordon Smyth
49k
Popular Question
to
Lluís Revilla Sancho
▴ 720
Popular Question
to
Frederik Ziebell
▴ 20
Popular Question
to
Sam
▴ 10
Scholar
to
Rory Stark
★ 5.1k
Locations
• All
Egypt,
just now
Germany,
6 minutes ago
South Korea,
22 minutes ago
France,
28 minutes ago
India,
35 minutes ago
Traffic: 603 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6