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1.2k
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HISAT2 mapping
hisat2
results
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
ali
• 0
0
votes
1
reply
4.5k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
Chiara
• 0
1
vote
2
replies
3.8k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
5.0 years ago
james
• 0
3
votes
6
replies
3.5k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
paula.vaccarello
• 0
2
votes
2
replies
1.3k
views
DESeq results gives all genes
deseq2
design matrix
results
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
evocanres
• 0
0
votes
1
reply
1.4k
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
batmaiden
• 0
0
votes
3
replies
1.5k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
jan.soderman
• 0
1
vote
3
replies
1.7k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
A
▴ 60
0
votes
0
replies
1.1k
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
7.9 years ago
414457044
• 0
0
votes
5
replies
2.0k
views
results {DESeq2} parameters
deseq2
results
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
Aurora
▴ 20
2
votes
5
replies
2.1k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 8.3 years ago by
Michael Love
43k • written 8.9 years ago by
tarun2
• 0
2
votes
4
replies
1.9k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 8.3 years ago by
Steve Lianoglou
★ 13k • written 8.3 years ago by
kritikamish99
▴ 10
3
votes
2
replies
4.6k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
8.3 years ago
hs.lansdell
▴ 20
2
votes
8
replies
2.0k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
6.5k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
courtney.stairs
• 0
2
votes
5
replies
5.0k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
bhgyu
▴ 30
1
vote
6
replies
2.6k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 9.0 years ago by
Michael Love
43k • written 9.0 years ago by
wariobrega
• 0
4
votes
4
replies
2.5k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
9.8 years ago • updated 9.7 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 10.5 years ago by
Michael Love
43k • written 10.5 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
5.6k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 10.5 years ago by
Michael Love
43k • written 10.5 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.6k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 10.6 years ago by
Michael Love
43k • written 10.6 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
4.0k
views
limma multiple rows per gene in output (write.fit)
limma
results
10.7 years ago
Anne
• 0
2
votes
15
replies
4.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
10.9 years ago • updated 10.8 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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