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BASiCS

10 months ago Jeffcgen2000 • 0

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BASiCS single-cell bayesian differential expression

updated 7.5 years ago by CataVallejos ▴ 10 • written 7.5 years ago by muad.abdelhay ▴ 10

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BASiCS bayesian single cell scrnaseq

updated 7.5 years ago by CataVallejos ▴ 10 • written 7.5 years ago by alexandriapinto1 ▴ 10

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Comment: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

Your question is a bit cryptic, Rich. Are you trying to rewrite the voomByGroup() function yourself, to incorporate functionality that the …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0

Thank you for pointing this out James, it works now!

Answer: HMP_2019_t2d data origin by Levi Waldron ★ 1.1k

Dear @pleiramalls, @blann, sorry for the delay! We obtained fastq files for the HMP2 study from the HMP data portal (https://portal.hmpda…

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k

I told you why, because you aggregate all cells into a single pseudobulk. You then need a pseudobulk per worm, but that assumes that in the…

Comment: Can NanoString data be analyzed using DESeq2? by ATpoint ★ 4.9k

There is nothing code-wise specific for Nanostring. The same workflow and code applies as if it was RNA-seq, ChIP-seq, any count dataset. R…

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Can NanoString data be analyzed using DESeq2?

Comment: Are voomByGroup and voomLmFit compatible?

Comment: Updated Support Site Editor

Updated Support Site Editor

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Popular Question to Levi Waldron ★ 1.1k