Showing : bayesian • reset
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 5.1 years ago by 48k • written 5.1 years ago by ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
5.6 years ago floriandeckert ▴ 30
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3
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1.2k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 5.8 years ago by ▴ 10 • written 5.8 years ago by ▴ 10
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2
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1.1k
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 5.8 years ago by ▴ 10 • written 5.8 years ago by ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
11.1 years ago Porterfield, Toni ▴ 10
3
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1
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11k
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 11.2 years ago by 64k • written 11.2 years ago by ▴ 140
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
11.4 years ago Siebourg Juliane ▴ 10
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1.1k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
11.7 years ago Dan Tenenbaum ★ 8.2k
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6
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6.7k
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 11.8 years ago by ▴ 290 • written 11.8 years ago by ★ 2.0k
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Help baySeq
Bayesian edgeR Bayesian edgeR
11.8 years ago Tina Asante Boahene ▴ 100
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2.1k
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 12.0 years ago by ▴ 40 • written 12.0 years ago by 48k
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1.1k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 12.0 years ago by 21k • written 12.0 years ago by ▴ 20
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1.2k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
12.1 years ago shirley zhang ★ 1.0k
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10
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1.5k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 2.0k
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3
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1.0k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ★ 2.0k
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1.3k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
12.1 years ago Richard Friedman ★ 2.0k
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2
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907
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 50
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
12.4 years ago Richard Friedman ★ 2.0k
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2.1k
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
12.4 years ago João Daniel Nunes Duarte ▴ 30
3
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2.6k
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
12.5 years ago Richard Friedman ★ 2.0k
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1.1k
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
12.5 years ago Xiaohui Wu ▴ 280
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0
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1.2k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
12.8 years ago Santosh Patnaik ▴ 30
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.1 years ago Martin Morgan 25k
0
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930
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
13.2 years ago Orfe, Lisa ▴ 20
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1
reply
940
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.3 years ago Gordon Smyth 48k
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900
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.3 years ago Orfe, Lisa ▴ 20
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0
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15k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.5 years ago David Lyon ▴ 330
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2
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963
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 13.8 years ago by ▴ 190 • written 13.8 years ago by ▴ 10
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1.0k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
13.8 years ago M. Carmen Ruiz de Villa ▴ 10
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1.2k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.1 years ago Patrick Aboyoun 1.6k
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1.0k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
14.5 years ago Mark Robinson ★ 1.1k
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979
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
14.7 years ago Kellie J. Archer, Ph.D. ▴ 120
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1.4k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.1 years ago Patrick Aboyoun 1.6k
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1.2k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 15.6 years ago by 1.6k • written 15.6 years ago by 25k
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668
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Questions of package "deal"
Network Bayesian Network Bayesian
15.7 years ago Tu Kang ▴ 20
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1.5k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
15.9 years ago Jean Yee Hwa Yang ▴ 130
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1
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1.2k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.2 years ago • updated 16.1 years ago Hervé Pagès 16k
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885
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Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
16.2 years ago Naomi Altman ★ 6.0k
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2
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999
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analysis with no replication
Bayesian limma Bayesian limma
updated 16.5 years ago by ▴ 390 • written 16.5 years ago by ▴ 450
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0
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1.0k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
16.6 years ago Seth Falcon ★ 7.4k
1
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1.2k
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adjusted p values of the genes in the intersection of Venn
Bayesian limma Bayesian limma
17.0 years ago Gordon Smyth 48k
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0
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1.8k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
17.3 years ago Gordon Smyth 48k
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3
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1.3k
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Bayesian networks in BioC
Bayesian Bayesian
updated 17.5 years ago by ★ 2.4k • written 17.5 years ago by ▴ 320
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0
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1.2k
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PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
17.6 years ago Ivo Kwee ▴ 30
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1.1k
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PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
17.7 years ago Ivo Kwee ▴ 30
0
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3
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2.4k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
17.8 years ago McGee, Monnie ▴ 300
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3
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1.5k
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
17.8 years ago Pete ▴ 70
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823
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help with bayesian network
Network Bayesian Network Bayesian
18.2 years ago goldoni ▴ 10
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0
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1.3k
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CyberT: Paired Bayes t-test (Bayes corrected p-values)
Normalization Bayesian Normalization Bayesian
18.4 years ago Gordon Smyth 48k
0
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0
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870
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identify gene expression markers using Bayesian
Bayesian Bayesian
19.2 years ago Liu, Xin ▴ 130
50 results • Page 1 of 1
Recent ...
Replies
Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k
I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k
This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…
Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0
Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…
Comment: Ensembl down??? by James W. MacDonald 64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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