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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.7 years ago
balwierz
▴ 40
1
vote
3
replies
1.1k
views
Error in bayespeak function importing data
bayespeak
8.7 years ago
Reed
▴ 10
8
votes
9
replies
6.1k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.9 years ago by
Gordon Smyth
50k • written 9.0 years ago by
samuel collombet
▴ 140
0
votes
8
replies
1.9k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.6 years ago
John linux-user
▴ 210
0
votes
1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.7 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
938
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.7 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.9k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.8 years ago by
Jonathan Cairns
▴ 130 • written 12.8 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.0k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.5 years ago by
Jonathan Cairns
▴ 130 • written 13.5 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.6k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 13.9 years ago by
Jonathan Cairns
▴ 130 • written 13.9 years ago by
Tim Rayner
▴ 270
9 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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