Bioconductor Bgx

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2.9k

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Annotation limma beadarray bgx Annotation limma beadarray bgx

updated 10.8 years ago by Gordon Smyth 51k • written 10.8 years ago by Stefanie Busch ▴ 10

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1.7k

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bgx AgiMicroRna bgx AgiMicroRna

updated 12.8 years ago by Lucas Santana dos Santos ▴ 60 • written 12.8 years ago by Karthik K N ▴ 200

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2.0k

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Microarray Annotation Normalization vsn bgx puma Microarray Annotation Normalization vsn

updated 14.4 years ago by Benilton Carvalho ★ 4.3k • written 14.5 years ago by Rainer Tischler ▴ 60

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915

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Microarray affy bgx Microarray affy bgx

14.5 years ago Ernest Turro ▴ 30

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1.3k

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bgx BGmix bgx BGmix

15.5 years ago Lucas Santana dos Santos ▴ 60

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1.1k

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Annotation Cancer bgx Annotation Cancer bgx

16.5 years ago Lynn Amon ▴ 280

6 results • Page 1 of 1

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Comment: Package needs internet access by firestar ▴ 20

That worked! Thanks! I created the genome file locally and uploaded that. I didn't really think that BSgenome.Hsapiens.UCSC.hg38 was only u…

Comment: limma technical repeat correction by john • 0

Hi @gordonsmyth, Thank you very much for your response. The normalization process involves multiple steps and they provide a normalised f…

Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble by Gordon Smyth 51k

No, the imbalance in sample sizes doesn't effect the performance of any of the methods. It is not a problem. You should not be downsampling…

Comment: limma technical repeat correction by Gordon Smyth 51k

I have never analysed SomaScan data, so I cannot make any specific recommendations about how to analyse such data. I have however analysed …

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela by Gordon Smyth 51k

voom() does not transform the data to be homoscedastic. Quite the opposite, it computes precision weights that reflect the mean-variance tr…

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Answer: Package needs internet access

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

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Popular Question to Robert Castelo ★ 3.4k