updated 2.1 years ago by
James W. MacDonald
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written 2.1 years ago by
Ashton
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Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
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I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design
by
James W. MacDonald
68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix:
```
> targets
ID Name phase G…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
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200
I would like to clarify whether the command
`res <- results(dds, name = "phaseLP.conditionTreated")`
is the correct approach to generate …
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