Bioconductor Biodist

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bioDist bioDist

updated 11.6 years ago by Paul Shannon ▴ 470 • written 11.6 years ago by Guest User ★ 13k

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bioDist bioDist

updated 12.2 years ago by James W. MacDonald 68k • written 12.2 years ago by Forst, Christian ▴ 90

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bioDist bioDist

updated 13.8 years ago by Wolfgang Huber ★ 13k • written 13.8 years ago by Ladan Amini ▴ 10

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Microarray Clustering bioDist Microarray Clustering bioDist

updated 15.5 years ago by Steve Lianoglou ★ 13k • written 15.5 years ago by Peng Yu ▴ 950

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Clustering bioDist Clustering bioDist

15.5 years ago Dana Sevak ▴ 10

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Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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