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biomartr
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getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
3.3 years ago
Matan G.
▴ 60
0
votes
9
replies
2.1k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO
biomartr
annotation
ensemble
fungi
updated 3.6 years ago by
James W. MacDonald
67k • written 3.6 years ago by
Bettina
• 0
0
votes
0
replies
828
views
taxonomy download from NCBI based on geneID
biomartr
Bioconducter
5.3 years ago
Jitendra
▴ 10
0
votes
3
replies
1.5k
views
getGenome {biomartr} not working for viruses?
Genbank
biomartr
Genomic sequences
6.5 years ago
peter.durr
• 0
1
vote
2
replies
1.1k
views
Trouble using getBM with ecaballus_gene_ensembl
biomart
biomartr
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
stephen.williams
▴ 10
5 results • Page
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Comment: Deseq2 res Function
by
James W. MacDonald
67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data
by
James W. MacDonald
67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Votes
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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