Bioconductor Bionero

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476

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GRN BioNERO

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by majeedaasim • 0

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884

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BioNERO

updated 18 months ago by Fabricio Almeida-Silva ▴ 40 • written 18 months ago by Biologist • 0

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401

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#BioNERO BioNERO Cystoscope

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 13 months ago by Hasani • 0

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716

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BioNERO Pviz

16 months ago • updated 14 months ago zxd95 • 0

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432

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BioNERO

8 months ago matevz.likar • 0

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203

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plot_expression_profile BioNERO

6 months ago Christopher • 0

6 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0