Showing : biovizbase • reset
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Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 3.0 years ago by 62k • written 3.0 years ago by ▴ 20
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732
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ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
6.8 years ago kevin.rue ▴ 320
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3.1k
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biovizBase package installation fails
biovizbase installation
updated 8.3 years ago by ★ 8.2k • written 8.3 years ago by • 0
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Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 8.6 years ago by ▴ 490 • written 8.6 years ago by 1.6k
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autoplot transcriptDb error with some regions
TranscriptDb biovizBase ggbio TranscriptDb biovizBase ggbio
updated 9.4 years ago by ▴ 490 • written 9.4 years ago by ★ 1.6k
5 results • Page 1 of 1
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Answer: Correct script for featurecounts in Rsubread by Gordon Smyth 47k
See - https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
Thank you very much @gordon-smyth ! I'm very happy that my test for interaction is okay. So I'll try to extend my test experiment to three …
Answer: Handling limma usage after running multiple imputation on the covariates with mi by Gordon Smyth 47k
limma is not designed to be used with multiply imputed covariates, so I can't offer a solution that uses the multiple imputes. Averaging t…
Answer: Correct script for featurecounts in Rsubread by James W. MacDonald 62k
Here's the relevant section from `?featureCounts` ``` Value: A list with the following components: counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data by Assa Yeroslaviz ★ 1.5k
thanks, the filter is the other way around, true 🙈
Votes
A: gene dispersion, what does it mean?
Answer: gene dispersion, what does it mean?
Limma time series spline help
Answer: Correct script for featurecounts in Rsubread
Comment: Time-course, comparison of two groups
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