Bioconductor Bitseq

Showing : bitseq • reset

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3.2k

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dexseq bitseq cuffdiff Differential exon usage isoforms

8.9 years ago • updated 8.8 years ago elle ▴ 10

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1.7k

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bitseq spliceR

9.0 years ago elle ▴ 10

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1.7k

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BitSeq BitSeq

updated 11.5 years ago by Peter Glaus ▴ 70 • written 11.5 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.5k

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dexseq bitseq spliceR

9.0 years ago elle ▴ 10

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1.3k

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BitSeq bitseq rnaseq

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by Sam McInturf ▴ 300

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1.3k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.1 years ago by Maayan Kreitzman ▴ 30 • written 11.1 years ago by Peter Glaus ▴ 70

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1.1k

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bitseq paired samples

updated 8.7 years ago by panagiotis.papastamoulis ▴ 30 • written 8.8 years ago by MariaJoseG • 0

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1.1k

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Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

11.2 years ago Peter Glaus ▴ 70

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1.1k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.1 years ago by Peter Glaus ▴ 70 • written 11.1 years ago by Maayan Kreitzman ▴ 30

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RNASeq safe BitSeq RNASeq safe BitSeq

11.2 years ago Dave Gerrard ▴ 40

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969

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RNASeq BitSeq RNASeq BitSeq

updated 11.2 years ago by Peter Glaus ▴ 70 • written 11.3 years ago by Dave Gerrard ▴ 40

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940

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BitSeq

updated 9.0 years ago by Antti Honkela ▴ 50 • written 9.0 years ago by dietmar.pils • 0

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850

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BitSeq BitSeq

11.5 years ago Fatemehsadat Seyednasrollah ▴ 260

13 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length