Biostar Blocking

Showing : blocking • reset

vote

286

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edgeR blocking

updated 15 months ago by Yunshun Chen ▴ 770 • written 15 months ago by Molly • 0

votes

replies

480

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diffbind blocking model

updated 21 months ago by Rory Stark ★ 4.4k • written 2.8 years ago by melnuesch ▴ 10

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463

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edger limma paired blocking ruvseq

updated 2.3 years ago by Gordon Smyth 46k • written 2.3 years ago by ScA • 0

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398

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limma repeated measurements blocking random effects

updated 2.5 years ago by Gordon Smyth 46k • written 2.5 years ago by Jane • 0

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2.3k

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limma edger blocking paired samples

updated 3.7 years ago by Gordon Smyth 46k • written 3.7 years ago by anou ▴ 10

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539

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diffbind differential binding analysis blocking

updated 4.6 years ago by Rory Stark ★ 4.4k • written 4.6 years ago by zhangly811 • 0

6 results • Page 1 of 1

Recent ...

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Answer: Conversion of UniProt to Ensembl by James W. MacDonald 60k

I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…

Comment: the difference between getGEO and getGEOSuppFiles by Fatemeh • 0

thank you!

Answer: the difference between getGEO and getGEOSuppFiles by James W. MacDonald 60k

When submitting data to GEO, you are supposed to provide both the raw data and a matrix of processed data. When you use `getGEO` you get th…

Comment: error running UniProt.ws by James W. MacDonald 60k

https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html

Comment: error running UniProt.ws by James W. MacDonald 60k

@marcelramos You have introduced a dependency on `BiocBaseUtils`, but that package is only available in devel.

Votes

Answer: the difference between getGEO and getGEOSuppFiles

Answer: TPM normalization starting with read counts

DEseq2 time-series design.

A: Importance of Order in Design Formula

Awards • All

Scholar to James W. MacDonald 60k

Popular Question to Matthew Ritchie ▴ 1000

Scholar to Thomas Carroll ▴ 410