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demisa
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christoph8
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updated 19 months ago by
Gordon Smyth
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written 19 months ago by
kawess
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updated 19 months ago by
Gordon Smyth
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Correct implementation of multifactorial paired analysis in limma software package for DE expression
updated 6.2 years ago by
Gordon Smyth
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written 6.2 years ago by
svlachavas
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6.5 years ago
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Comment: Limma paired analysis design question
by
jefflincoln4
•
0
Thank you Gordon. One more thing, why use the log of blood iron concentration?
Answer: Limma paired analysis design question
by
Gordon Smyth
42k
Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…
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Hervé Pagès
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Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…
Comment: Compute fgsea with my own database with R version 4.0.2
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assaron
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190
I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…
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Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…
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