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966
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Replacing an AffyBatch probe set
Normalization probe BUS Normalization probe BUS
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 20
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1
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1.5k
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scanBam error with bamViews
BUS Rsamtools BUS Rsamtools
updated 15.2 years ago by 25k • written 15.3 years ago by ▴ 970
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lumi package
Cancer lumi BUS Cancer lumi BUS
16.0 years ago Weiwei Shi ★ 1.2k
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ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.1 years ago by ★ 1.2k • written 17.1 years ago by ▴ 40
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ReadAffy crashes on mac
affy BUS affy BUS
updated 17.2 years ago by ★ 2.4k • written 17.2 years ago by ★ 1.6k
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7
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ReadAffy crashes R-devel on mac
BUS BUS
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 150
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update.packages() for bioconductor packages generates bus error in R.app for R-2.6.1 on Mac OS X
BUS BUS
17.8 years ago Steven McKinney ▴ 310
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4
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2.2k
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[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ★ 6.5k
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1.4k
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Mac os x graphviz-Rgraphviz problem
Biobase annotate graph Rgraphviz BUS Biobase annotate graph Rgraphviz BUS
18.6 years ago Gavai, Anand ▴ 40
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1.1k
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[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 430
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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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