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cellmix
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Extracting results from a DSA fit to expression data with only a gene markers list
cellmix
7.0 years ago
nrubinstein
• 0
3
votes
3
replies
2.0k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.8 years ago
gabor.halasz
• 0
1
vote
1
reply
2.1k
views
CellMix compare results to CellCODE
cellmix
cellcode
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
christopher.clarskon15
▴ 20
0
votes
0
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955
views
Coefmap plot without the sorting
coefmap
cellmix
8.9 years ago
thrabe
• 0
0
votes
0
replies
1.1k
views
basismarkermap scaling fails for large data
Cellmix
8.9 years ago
thrabe
• 0
0
votes
1
reply
975
views
Access MarkerList attribute
cellmix
8.9 years ago
thrabe
• 0
0
votes
0
replies
1.7k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
9.4 years ago
carleshf
▴ 10
7 results • Page
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Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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Shian Su
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