Showing : champdata • reset
2
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10
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4.8k
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Problem at champ.load
ChAMPdata ChAMP
updated 11 months ago by • 0 • written 2.8 years ago by • 0
0
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0
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717
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Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
15 months ago elgomez • 0
2
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7
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5.3k
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Annotation for EPICv2
EpicV2 ChAMPdata
updated 15 months ago by • 0 • written 16 months ago by • 0
2
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4
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1.7k
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Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 22 months ago by 68k • written 22 months ago by • 0
0
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788
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how to solve this error?
ChAMPdata ChAMP
24 months ago Meghana • 0
0
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2
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2.0k
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Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 2.7 years ago by • 0 • written 5.0 years ago by • 0
0
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1
reply
1.4k
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Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 3.9 years ago by • 0 • written 3.9 years ago by • 0
0
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3
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1.7k
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Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 4.1 years ago by ▴ 780 • written 4.1 years ago by • 0
0
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3
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2.0k
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Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
updated 12 months ago by • 0 • written 4.5 years ago by • 0
2
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1
reply
1.9k
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How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 4.8 years ago by 4.3k • written 4.8 years ago by ▴ 10
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2
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1.4k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
5.0 years ago sissialva21 • 0
11 results • Page 1 of 1
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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Votes
Answer: Subsetting data verses contrasts [DESeq2]?
A: WGCNA differences two groups 10 replicates each group
A: WGCNA sample size minimum: why?
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
Answer: Can you colour dendrogram branch clusters in pheatmap?
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