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506
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Typo in citation for RNASeqPower
RNASeqPower
citation
22 months ago
stephenjjohnson
• 0
3
votes
2
replies
551
views
Submitting a new package prior to publication
package-creation
citation
submit-package
updated 4.3 years ago by
shepherl
3.8k • written 4.3 years ago by
Krutik Patel
▴ 10
2
votes
2
replies
816
views
change the citation of accepted Bioconductor R pacakage
citation
updated 5.7 years ago by
shepherl
3.8k • written 5.7 years ago by
xyluo1991
• 0
0
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1
reply
618
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Request Citation Permission
citation
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
takakoma
• 0
12
votes
5
replies
1.9k
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News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.5 years ago
shepherl
3.8k
14
votes
8
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2.6k
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News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.6 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
0
votes
2
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984
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differences in formatting of the citation on the bioconductor link and from within R console
citation
7.6 years ago
bhakti.dwivedi
• 0
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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