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6

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deseq2 comparison batch

updated 4.9 years ago by Joana.silvestre • 0 • written 6.2 years ago by amin.ghareyazi • 0

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deseq2 comparison design paired treatment

updated 5.9 years ago by swbarnes2 ★ 1.4k • written 5.9 years ago by tinglec • 0

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DESeq2 DEG ANOVA Batch effect Comparison

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by amin.ghareyazi • 0

3 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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