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controls
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Running DESeq2 on viral infection without control/host data
DESeq2
viral
controls
19 months ago
f99942
• 0
0
votes
8
replies
2.0k
views
Two controls in RNAseq formula for DESeq2
deseq2
formula
controls
design
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
taveluz
• 0
0
votes
2
replies
4.4k
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DESeq2 estimateSizeFactors with control genes
deseq2
differential gene expression
controls
references
updated 5.5 years ago by
mahesh
• 0 • written 5.5 years ago by
cris.kgs
• 0
0
votes
2
replies
984
views
How can I define which samples are controls and which samples are cases in ChAMP
ChAMP
champ.DMP
Cases
Controls
references
5.6 years ago
yuabrahamliu
• 0
4 results • Page
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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