Biostar Coordinate

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391

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diffbind Rory Stark coordinate

updated 2.4 years ago by Rory Stark ★ 4.4k • written 2.5 years ago by Guandong Shang ▴ 20

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863

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dmrcate gene symbol coordinate

4.1 years ago 574233829 • 0

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566

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granges coordinate genome browser

updated 5.9 years ago by Michael Lawrence 11k • written 5.9 years ago by Charles Plessy ▴ 170

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2.2k

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r edgeR estimatedispersions coordinate

6.7 years ago pertille • 0

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19k

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tcga cnv gene symbol coordinate

updated 5 days ago by michaelwegert • 0 • written 7.3 years ago by NS ▴ 60

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Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20

Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…

Comment: MMDiff2 memory issues by e.iich • 0

running against a similar issue. Have you found any solutions?

Answer: mapToAlignments_issue by Hervé Pagès 15k

> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…

Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k

Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?

Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0

Worked well under pROC. Thank you

Votes

A: EGSEA error during report generation: "only 0's may be mixed with negative subsc

Answer: mapToAlignments_issue

Analysis of peaks generated from Homer using Diffbind

How to select summit size for histone ChiP-Seq in Diffbind

Comment: GSEA with Wikipathways not entirely reproducible

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