Showing : gene symbol • reset
0
votes
4
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197
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DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
18 months ago jason.williams • 0
0
votes
3
replies
529
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DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 2.6 years ago by 33k • written 2.6 years ago by ▴ 10
1
vote
2
replies
383
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Obtain GRanges object by gene names
GRanges gene symbol IdeoViz
2.6 years ago Arman Shahrisa ▴ 20
0
votes
3
replies
577
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DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
3.0 years ago 574233829 • 0
0
votes
3
replies
887
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Choosing most accurate gene symbol from multiple gene symbols
transcript_id gene symbol
updated 5.8 years ago by 57k • written 5.8 years ago by ▴ 20
2
votes
4
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9.2k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 5.9 years ago by ▴ 760 • written 6.1 years ago by ▴ 20
0
votes
2
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2.2k
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Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 6.0 years ago by ★ 1.5k • written 6.0 years ago by ▴ 110
3
votes
3
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1.3k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart homo.sapiens genome regions gene symbol
updated 6.1 years ago by 15k • written 6.1 years ago by ▴ 60
25
votes
18
replies
16k
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Mapping genome regions to gene symbols
tcga cnv gene symbol coordinate
updated 6.1 years ago by ▴ 90 • written 6.2 years ago by ▴ 60
0
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3
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1.7k
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filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
6.3 years ago alakatos ▴ 110
10 results • Page 1 of 1
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Replies
Comment: lmFit, continuous exposure, adjustment covariates by AyHi • 0
Dear Gordon, Thank you so much for your reply. It worked well! I just changed y to t because the protein values were included in dat in my…
Answer: To retrieve the transcript from gff file with the longest isoform by James W. MacDonald 57k
Neither biomartr, nor orthologr are Bioconductor packages, so this isn't the place to ask questions about them. However, the question yo…
Comment: Data input for aracne2regulon function in viper package by Mikael • 0
Hi Luna_P, I think I am in a very similar situation. I get the same error message and modified my network file as mentioned above but I s…
Comment: change text size in plotmd functtion by Gordon Smyth 43k
plotMD accepts the usual range of R graphics parameters, see `?par`.
Comment: Error in SingleR, no common genes between 'test' and 'ref' by Imtiaz • 0
Thank you for your comment. I tried to change gene symbol to Ensembl gene ID applying this command: rownames(pbmc.sce) <- uniquifyFea…
Votes
A: How to use GenomicRanges to find overlaps by percentage covered of interval
A: How to use GenomicRanges to find overlaps by percentage covered of interval
How to use GenomicRanges to find overlaps by percentage covered of interval
Answer: lmFit, continuous exposure, adjustment covariates
Answer: lmFit, continuous exposure, adjustment covariates
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