Bioconductor Gene symbol

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2.5k

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deseq2 dataframe ensembl gene id gene symbol entrezid

4.3 years ago jason.williams • 0

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1.9k

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deseq2 gene symbol ensembl

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by thkapell ▴ 10

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929

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GRanges gene symbol IdeoViz

5.4 years ago Arman Shahrisa ▴ 20

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1.6k

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dmrcate gene symbol coordinate

5.8 years ago 574233829 • 0

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1.5k

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transcript_id gene symbol

updated 8.7 years ago by James W. MacDonald 65k • written 8.7 years ago by Jo ▴ 30

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13k

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biomart gene symbol

updated 8.8 years ago by Diego Diez ▴ 760 • written 8.9 years ago by chang02_23 ▴ 30

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3.4k

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Pathview KEGG annotation gene symbol visualization

updated 8.8 years ago by Luo Weijun ★ 1.6k • written 8.8 years ago by alakatos ▴ 130

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2.9k

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biomart homo.sapiens genome regions gene symbol

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by NS ▴ 60

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23k

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tcga cnv gene symbol coordinate

updated 17 months ago by James W. MacDonald 65k • written 9.0 years ago by NS ▴ 60

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2.6k

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probe filter subset gene symbol affy

9.1 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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