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24k

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tcga cnv gene symbol coordinate

updated 22 months ago by James W. MacDonald 67k • written 9.4 years ago by NS ▴ 60

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980

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diffbind Rory Stark coordinate

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Guandong Shang ▴ 40

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1.8k

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dmrcate gene symbol coordinate

6.2 years ago 574233829 • 0

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1.0k

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granges coordinate genome browser

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Charles Plessy ▴ 180

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3.4k

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r edgeR estimatedispersions coordinate

8.8 years ago pertille • 0

5 results • Page 1 of 1

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Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thank you for the additional information! We are currently developing a significantly improved version of `Sublong`. Unfortunately, the old…

Answer: object 'hdac_targets' not found by James W. MacDonald 67k

I believe you missed some steps: ``` ## ----trTargets------------------------------------------------------------- tr_targets <- subse…

Answer: KEGGgraph result difference by alex.pico ▴ 20

I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…

Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k

It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …

Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730

This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …

Votes

C: Usability of ERCC spike-ins in standard RNAseq experiments

A: Usability of ERCC spike-ins in standard RNAseq experiments

A: Using the ERCC spike as a normalization factor for a custom algorithm

Answer: Cannabis and KEGGgraph

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Popular Question to Robert Castelo ★ 3.4k