Bioconductor Count matrix

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5.9k

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rpkm gene length count matrix edgeR rsubread

9.4 years ago AB ▴ 110

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2.8k

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summarizeoverlaps summarizedexperiment count matrix low counts rna-seq

updated 9.1 years ago by Valerie Obenchain ★ 6.8k • written 9.1 years ago by shania90.lk ▴ 10

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2.2k

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RSEM deseq2 count matrix

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by kmeusemann • 0

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5.6k

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deseq2 rnaseq count matrix galignments granges

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by bananaal1 ▴ 10

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9.0k

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deseq2 count matrix star

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by nikelle.petrillo • 0

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1.8k

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simulation count matrix RNA-seq Polyester

updated 7.2 years ago by Alyssa Frazee ▴ 210 • written 7.2 years ago by fa.gholizadeh89 • 0

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2.2k

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rnaseq summarizeoverlaps count matrix

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by johnsonn573 • 0

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1.0k

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count matrix

7.7 years ago nosheenfaiz09 • 0

8 results • Page 1 of 1

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Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

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Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

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Popular Question to xiaofeiwang198266 • 0

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Popular Question to James W. MacDonald 68k