Bioconductor Cpg

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CpG

updated 7.0 years ago by James W. MacDonald 65k • written 7.0 years ago by ericotorrieri • 0

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2.2k

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CpG

9.2 years ago • updated 9.1 years ago Tiphaine Martin ▴ 40

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1.5k

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CpG CpG sites CpG dinucleotides

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by ibetfer3 • 0

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1.3k

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annotatr cpg

updated 5.5 years ago by rcavalca ▴ 140 • written 5.5 years ago by soli5 • 0

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1.2k

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CpG MEDIPS

5.5 years ago saripalligautam86 ▴ 10

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459

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SBE CpG minfi CpGinterrogation

4 months ago kyj2226 • 0

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298

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MEDIPS CpG

7 months ago greta • 0

7 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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