Showing : MEDIPS • reset
0
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143
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MEDIPS - covariate
MEDIPS
updated 5 weeks ago by 64k • written 5 weeks ago by • 0
0
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0
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135
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CpG coverage with MEDIPS
MEDIPS CpG
10 weeks ago greta • 0
0
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0
replies
361
views
How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
9 months ago Luomeng • 0
1
vote
4
replies
851
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM edgeR qsea MEDIPS
updated 14 months ago by • 0 • written 14 months ago by ▴ 20
0
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2
replies
637
views
MBD-seq non model species
MethylSeq ramwas MEDIPS qsea
updated 15 months ago by • 0 • written 16 months ago by ▴ 10
0
votes
2
replies
814
views
MEDIPS - error using MEDIPS.CpGenrich
MEDIPS
22 months ago • updated 21 months ago Ian • 0
0
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0
replies
606
views
MEDIPS.meth output
MEDIPS edgeR l
2.2 years ago Aranzazu • 0
0
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0
replies
582
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MEDIPS - export wig with normalized counts
MEDIPS
2.8 years ago lshepard ▴ 40
7
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17
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2.4k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 3.3 years ago by ▴ 240 • written 6.7 years ago by ▴ 20
2
votes
4
replies
737
views
MEDIPS results differ with sample ordering
MEDIPS edgeR
updated 3.5 years ago by ▴ 570 • written 3.8 years ago by ▴ 60
2
votes
1
reply
713
views
MEDIPS - Error in MEDIPS.CpGenrich
MEDIPS
updated 3.7 years ago by ▴ 570 • written 3.7 years ago by ▴ 20
1
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1
reply
616
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MEDIPS.CpGenrich now that RangedData is deprecated
MEDIPS RangedData GenomicRanges
updated 3.8 years ago by ▴ 570 • written 3.8 years ago by • 0
1
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2
replies
775
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Read counts between QSEA and MEDIPs
qsea medips
updated 3.8 years ago by ▴ 240 • written 3.8 years ago by • 0
4
votes
5
replies
1.1k
views
Extracting normalized counts in MEDIPS
MEDIPS MeDIP-seq
updated 2.2 years ago by ▴ 20 • written 4.0 years ago by ▴ 40
0
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0
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498
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Why does MEDIPS only import read 1 when paired=TRUE for MEDIPS.createSet()function ?
#MEDIPS MEDIPS
4.1 years ago agm • 0
1
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1
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764
views
sva correction for MEDIPS
MEDIPS svaseq sva
updated 4.8 years ago by ▴ 570 • written 4.8 years ago by • 0
0
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0
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870
views
error importing bam file for MEDIPS analysis
MEDIPS bamfile
updated 4.9 years ago by 0 • written 5.1 years ago by • 0
1
vote
2
replies
842
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Comparing more than 2 experimental groups with MEDIPS?
medips medip-seq dna methylation dmr analysis
updated 5.0 years ago by ▴ 570 • written 5.0 years ago by • 0
0
votes
2
replies
985
views
create.set on MEDIPS
medips createset
updated 5.0 years ago by ▴ 570 • written 5.0 years ago by • 0
0
votes
4
replies
1.1k
views
CpG density in MEDIPS
CpG MEDIPS
5.1 years ago saripalligautam86 ▴ 10
0
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0
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854
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Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools QSEA MEDIPS
5.1 years ago saripalligautam86 ▴ 10
0
votes
3
replies
939
views
Coupling set error in MEDIPS
medips coupling set error cpg density
5.1 years ago saripalligautam86 ▴ 10
0
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0
replies
579
views
CouplingSet error in MeDIPS
MEDIPS coupling set error
5.1 years ago saripalligautam86 ▴ 10
0
votes
3
replies
1.1k
views
MEDIPS - Annotation output explanation
MEDIPS Output
5.6 years ago vjain • 0
1
vote
6
replies
1.6k
views
MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
updated 5.7 years ago by ▴ 570 • written 5.7 years ago by • 0
3
votes
1
reply
1.0k
views
RMS question in MEDIPS
RMS RPKM MEDIPS
updated 5.8 years ago by ▴ 570 • written 5.8 years ago by ▴ 10
0
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6
replies
1.7k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medips medip-seq
7.3 years ago • updated 6.5 years ago stb • 0
3
votes
5
replies
1.4k
views
CNV parameter not working - MEDIPS
medips medip-seq error lukas
updated 6.5 years ago by ▴ 240 • written 6.5 years ago by • 0
1
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1
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1.1k
views
Window size for MEDIPS
medips medip-seq peak finding luckas
updated 6.6 years ago by ▴ 570 • written 6.6 years ago by • 0
0
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2
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1.6k
views
MeQA and MEDIPS
bioconductor meqa medips
updated 6.6 years ago by • 0 • written 7.6 years ago by • 0
0
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1
reply
960
views
How does the function MEDIPS.CpGenrich work?
medips
updated 6.6 years ago by ▴ 570 • written 6.6 years ago by • 0
0
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1
reply
1.3k
views
Error raised during execution of MEDIPS package
medips
updated 6.7 years ago by ▴ 570 • written 6.7 years ago by • 0
0
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1
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966
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MEDIPS: case study with different replicate numbers of control and case
MEDIPS
updated 6.9 years ago by ▴ 570 • written 6.9 years ago by • 0
0
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1
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998
views
Insertion size when using 'paired' in MEDIPS.createSet()
medips R medip-seq pair-end reads
updated 7.0 years ago by ▴ 570 • written 7.0 years ago by • 0
0
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1
reply
961
views
How to make my custom genome available in MEDIPS?
MEDIPS
7.1 years ago Vijay Lakhujani • 0
0
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1
reply
1.2k
views
similar problem installing MEDIPS on Ubuntu 14.04
installation medips
7.1 years ago avilella ▴ 10
0
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1
reply
1.1k
views
MEDIPS - do reads without CG's get filtered out prior to analysis?
medips
updated 7.1 years ago by ▴ 570 • written 7.1 years ago by • 0
0
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1
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936
views
How does the 'paired' argument works in MeDIPS 1.23.2
medips medip-seq R pair-end reads
updated 7.2 years ago by ▴ 570 • written 7.2 years ago by • 0
0
votes
1
reply
1.1k
views
Gene Symbol Annotation
medips
updated 7.3 years ago by ▴ 570 • written 7.3 years ago by • 0
0
votes
1
reply
984
views
TMM Normalization within MEDIPS ups some zero counts, is this normal?
MEDIPS
updated 7.3 years ago by ▴ 570 • written 7.3 years ago by • 0
1
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1
reply
1.3k
views
MeDIPS and use of the 'bwa' parameter
R medip-seq medips bwa
updated 7.3 years ago by ▴ 570 • written 7.3 years ago by • 0
1
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6
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1.2k
views
Alternative methylation contexts with MEDIPS?
MEDIPS
updated 7.3 years ago by ▴ 240 • written 7.3 years ago by ▴ 90
0
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6
replies
1.4k
views
MEDIPS - input
MEDIPS input
7.5 years ago • updated 7.4 years ago GFM ▴ 20
0
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1
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1.1k
views
Questions for MEDIPS getPairedGRange function in MEDIPS.readRegionsFile.R
medips bam file
7.5 years ago fkuo ▴ 10
0
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6
replies
1.8k
views
MEDIPS: Number of windows tested in Paired-end data set
medips r
7.6 years ago peter.mcerlean • 0
0
votes
5
replies
1.5k
views
MEDIPS genome Vs createROIset significance issue
medips r
7.8 years ago peter.mcerlean • 0
0
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1
reply
1.5k
views
Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R
updated 7.8 years ago by ▴ 570 • written 7.8 years ago by • 0
0
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1
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1.2k
views
How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
R Medips edgeR
updated 7.8 years ago by ▴ 570 • written 7.8 years ago by • 0
2
votes
1
reply
1.1k
views
How createSet from reduced "paire-ed" sequencing on MeDIPS?
medips R input files
updated 7.8 years ago by ▴ 570 • written 7.8 years ago by • 0
0
votes
1
reply
1.0k
views
MEDIPS stable version problem
MEDIPS
updated 7.9 years ago by ▴ 570 • written 7.9 years ago by • 0
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