Showing : annotatr • reset
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annotatr with custom TxDb
GenomicFeatures annotatr genomicFe
20 days ago António Miguel de Jesus Domingues ▴ 480
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
4 months ago rohitsatyam102 ▴ 10
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65
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annotatr package: GRanges object contains out-of-bound ranges
annotatr GenomicRanges
6 months ago Nala • 0
3
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4
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158
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Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
13 months ago dakarai_esgdaille ▴ 10
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462
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annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 2.5 years ago by ▴ 140 • written 2.5 years ago by • 0
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3
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CpG site not annotated with annotatr
annotatr cpg
updated 2.6 years ago by ▴ 140 • written 2.6 years ago by • 0
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1
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380
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ENSEMBL database for annotatr
annotatr
updated 3.2 years ago by ▴ 140 • written 3.2 years ago by • 0
2
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2
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423
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Unexpected results from annotatr
annotatr
updated 3.2 years ago by ▴ 140 • written 3.2 years ago by • 0
2
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2
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402
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'fill_order' in annotatr
annotatr
updated 3.2 years ago by ▴ 140 • written 3.2 years ago by • 0
1
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3
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486
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How can I use Annotatr on CDS?
Annotatr CDS Exon UTR
updated 3.3 years ago by ▴ 140 • written 3.3 years ago by • 0
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3
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515
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find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
4.3 years ago vivianengoune • 0
0
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2
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733
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annotatr GRanges Error
annotatr
updated 4.3 years ago by ▴ 140 • written 4.3 years ago by • 0
4
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2
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547
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Annotatr package not loading certain features
annotatr
updated 4.5 years ago by ★ 6.7k • written 4.5 years ago by • 0
13 results • Page 1 of 1
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Comment: DESeq2 Multi-factor design not full rank by jehimi • 0
Hi Michael! Thank you very much for your response. I tried what you said, specifically setting design as ~ 1, like so: ```r dds <- DESeqD…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
I posted it above, but maybe it wasn't clear. Here it is again: ``` library(DESeq2) ExonCountFiles <- "/Bigdata/Dropbox (Technion Dropbox)…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by Michael Love 33k
I can't help debug because you haven't posted the code where you actually get the error. Can you post that, and also the output from `trace…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
alternatively is there a work around for `DESeqDataSetFromHTSeqCount`. I guess I could convert it to a count matrix and then use `DESeqData…
Comment: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM by ben.vanderveer • 0
Thanks, it works! I did call the object in my script different, but for clarity here I changed it. best, Ben
Votes
Answer: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM
Answer: phenotypic table for DESeqDataSetFromHTSeqCount
Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa
Answer: Error: C stack usage of HDF5Array
Answer: "dim<-" against on-disk arrays
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