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Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
by
Guido Hooiveld
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4.1k
Thanks James! I indeed missed the obvious... all clear now!
Comment: How to read OSCA book?
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zr
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Got it, that had really confused me a bit, thank you for your help!
Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl
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James W. MacDonald
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Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.
Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl
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bioinformata
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Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
by
James W. MacDonald
67k
Hi Guido,
It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …
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