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annotatr
•
reset
0
votes
0
replies
125
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
5 months ago
Ahdee
▴ 50
0
votes
0
replies
223
views
annotatr with custom TxDb
GenomicFeatures
annotatr
genomicFe
12 months ago
António Miguel de Jesus Domingues
▴ 480
0
votes
0
replies
290
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
17 months ago
rohitsatyam102
▴ 20
0
votes
0
replies
235
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr
GenomicRanges
18 months ago
Nala
• 0
3
votes
4
replies
543
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
2.1 years ago
dakarai_esgdaille
▴ 10
1
vote
1
reply
764
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 3.5 years ago by
rcavalca
▴ 140 • written 3.5 years ago by
sorjuelal
• 0
0
votes
3
replies
542
views
CpG site not annotated with annotatr
annotatr
cpg
updated 3.6 years ago by
rcavalca
▴ 140 • written 3.6 years ago by
soli5
• 0
0
votes
1
reply
552
views
ENSEMBL database for annotatr
annotatr
updated 4.2 years ago by
rcavalca
▴ 140 • written 4.2 years ago by
xie186
• 0
2
votes
2
replies
616
views
Unexpected results from annotatr
annotatr
updated 4.2 years ago by
rcavalca
▴ 140 • written 4.2 years ago by
xie186
• 0
2
votes
2
replies
534
views
'fill_order' in annotatr
annotatr
updated 4.2 years ago by
rcavalca
▴ 140 • written 4.2 years ago by
xie186
• 0
1
vote
3
replies
694
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 4.3 years ago by
rcavalca
▴ 140 • written 4.3 years ago by
xie186
• 0
0
votes
3
replies
684
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
5.3 years ago
vivianengoune
• 0
0
votes
2
replies
993
views
annotatr GRanges Error
annotatr
updated 5.3 years ago by
rcavalca
▴ 140 • written 5.3 years ago by
cguzman.roma
• 0
4
votes
2
replies
734
views
Annotatr package not loading certain features
annotatr
updated 5.5 years ago by
Valerie Obenchain
★ 6.7k • written 5.5 years ago by
divyswar01
• 0
14 results • Page
1 of 1
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Replies
Comment: Quantile Normalization after rma or not?
by
Yang Shi
• 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works?
by
gowthamee
• 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways
by
zohreh.fazelan
• 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates
by
Gordon Smyth
45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma
by
Gordon Smyth
45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
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