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cpg
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0
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3
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2.2k
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Compute the CpG content for all chromosome like the percentage of G+C
CpG
9.2 years ago • updated 9.1 years ago
Tiphaine Martin
▴ 40
0
votes
4
replies
1.2k
views
CpG density in MEDIPS
CpG
MEDIPS
5.6 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.5k
views
CpG Sites // CG dinucleotides
CpG
CpG sites
CpG dinucleotides
updated 6.7 years ago by
Hervé Pagès
16k • written 6.7 years ago by
ibetfer3
• 0
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.6 years ago by
rcavalca
▴ 140 • written 5.6 years ago by
soli5
• 0
1
vote
1
reply
6.0k
views
How to get the all CpG sites genome postion for hg19
CpG
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
ericotorrieri
• 0
3
votes
2
replies
465
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE
CpG
minfi
CpGinterrogation
4 months ago
kyj2226
• 0
0
votes
0
replies
301
views
CpG coverage with MEDIPS
MEDIPS
CpG
7 months ago
greta
• 0
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Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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