Showing : curatedTCGAData • reset
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TCGA-GBM subtype tumor
curatedTCGAData
updated 9 months ago by 700 • written 9 months ago by • 0
0
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1
reply
950
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curatedTCGAData: How to get metadata about assays
curatedTCGAData
updated 3.4 years ago by 700 • written 3.4 years ago by • 0
3
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4
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2.1k
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Error with R package curatedTCGAData while trying to download TCGA MultiAssayExperiments
MultiAssayExperiment curatedTCGAData TCGAutils
3.9 years ago svlachavas ▴ 830
3
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3
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1.4k
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Error in MAE experiment regarding the replacement of internal assays with different number of features
MultiAssayExperiment curatedTCGAData TCGAutils
updated 3.9 years ago by 700 • written 3.9 years ago by ▴ 830
3
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3
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1.5k
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Implementation of MultiAssayExperiment and curatedTCGAData R packages for quering and prosessing multi-omics cancer datasets
MultiAssayExperiment curatedTCGAData TCGAutils
updated 3.9 years ago by 700 • written 4.1 years ago by ▴ 830
5
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4
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2.1k
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Perform correlation analysis between miRNA and mRNA gene expression data on the same TCGA dataset based on the curatedTCGAData
curatedTCGAData MultiAssayExperiment multiomics TCGA
updated 5.6 years ago by ★ 1.1k • written 5.6 years ago by ▴ 830
6 results • Page 1 of 1
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Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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