Bioconductor TCGAutils

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336

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normalization RNASEQ Normalization TCGAutils TCGA

updated 9 months ago by ATpoint ★ 3.4k • written 9 months ago by Deniz • 0

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1.5k

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MultiAssayExperiment curatedTCGAData TCGAutils

2.8 years ago svlachavas ▴ 810

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913

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 2.8 years ago by Marcel Ramos 680 • written 2.8 years ago by svlachavas ▴ 810

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989

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 2.8 years ago by Marcel Ramos 680 • written 2.9 years ago by svlachavas ▴ 810

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3.2k

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 4.2 years ago by Marcel Ramos 680 • written 4.2 years ago by Dario Strbenac ★ 1.5k

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639

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TCGAutils

updated 4.5 years ago by Levi Waldron 1.1k • written 4.5 years ago by vittorio.fortino • 0

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1.1k

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TCGAutils multiassayexperiment coad

updated 5.2 years ago by Marcel Ramos 680 • written 5.2 years ago by mario.zanfardino ▴ 160

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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