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TCGAutils
•
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0
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41
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GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
TCGAutils
25 days ago
Emre
• 0
3
votes
4
replies
854
views
Error with R package curatedTCGAData while trying to download TCGA MultiAssayExperiments
MultiAssayExperiment
curatedTCGAData
TCGAutils
17 months ago
svlachavas
▴ 780
3
votes
3
replies
450
views
Error in MAE experiment regarding the replacement of internal assays with different number of features
MultiAssayExperiment
curatedTCGAData
TCGAutils
updated 17 months ago by
Marcel Ramos
570 • written 17 months ago by
svlachavas
▴ 780
3
votes
3
replies
548
views
Implementation of MultiAssayExperiment and curatedTCGAData R packages for quering and prosessing multi-omics cancer datasets
MultiAssayExperiment
curatedTCGAData
TCGAutils
updated 17 months ago by
Marcel Ramos
570 • written 19 months ago by
svlachavas
▴ 780
5
votes
11
replies
1.9k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 2.9 years ago by
Marcel Ramos
570 • written 2.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
339
views
Breast cancer subtypes in TCGAutils
TCGAutils
updated 3.1 years ago by
Levi Waldron
1.1k • written 3.1 years ago by
vittorio.fortino
• 0
3
votes
4
replies
621
views
TCGAutils: Error in .checkBarcodes(barcodes) : barcode delimiters not consistent
TCGAutils
multiassayexperiment
coad
updated 3.9 years ago by
Marcel Ramos
570 • written 3.9 years ago by
mario.zanfardino
▴ 160
7 results • Page
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Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
rsnorman
• 0
Thanks for the advice! I need to use this particular bacterial strain, but I did locate a more recent annotation for it and that cleared th…
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
shepherl
3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt? ``` > makeOrgPackageFromNCBI( + version = "0.1", + …
Comment: CPM after RUVseq
by
Jess
• 0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Answer: NMF installation with current R version
by
shepherl
3.1k
Install the Biobase package ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::ins…
Answer: Creating DESeq object and choosing a contrast
by
Michael Love
37k
If you've read over the section on interactions and are still confused what these terms mean, I'd recommend consulting with a statistician …
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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Lluís Revilla Sancho
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