updated 4.6 years ago by
Peter Hickey
▴
650
•
written 4.6 years ago by
maltethodberg
▴
160
8
votes
8
replies
1.1k
views
Recent ...
Replies
Answer: DESeq2 + analysis question for design with uneven time point design
by
Michael Love
40k
I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…
Answer: Genes with highest differential expression have very low read counts for most ge
by
Michael Love
40k
Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Gordon Smyth
47k
> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…
Comment: Extract Limma Adjusted Values for Plotting
by
ATpoint
★
2.9k
Yes, with normalized counts on log2 scale.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴
20
A no I never referred to transcriptomic data when I was talking about "standard procedure"
I was referring to the way we analyze longitudin…
Awards
• All
Scholar to
Mike Smith
★
6.0k
Popular Question to
Martin Morgan
25k
Popular Question to
Hervé Pagès
16k
Popular Question to
Gordon Smyth
47k
Locations
• All
United States, 6 minutes ago
Russia, 14 minutes ago
WEHI, Melbourne, Australia, 22 minutes ago
United States, 52 minutes ago
United States, 1 hour ago
United States, 6 minutes ago
Russia, 14 minutes ago
WEHI, Melbourne, Australia, 22 minutes ago
United States, 52 minutes ago
United States, 1 hour ago
Traffic: 195 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6