Bioconductor Deseq

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DESeq DESeq

15.2 years ago Graham Thomas ▴ 20

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1.6k

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DESeq DESeq

updated 15.2 years ago by Naomi Altman ★ 6.0k • written 15.2 years ago by Pete Shepard ▴ 240

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Normalization DEGseq DESeq Normalization DEGseq DESeq

15.2 years ago sunghee OH ▴ 50

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edgeR DEGseq DESeq edgeR DEGseq DESeq

updated 15.2 years ago by Simon Anders ★ 3.8k • written 15.2 years ago by sunghee OH ▴ 50

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DESeq DESeq

updated 15.2 years ago by Vincent J. Carey, Jr. 6.7k • written 15.2 years ago by Jinyan Huang ▴ 190

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1.2k

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DESeq DESeq

15.2 years ago Andreia Fonseca ▴ 810

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979

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DESeq DESeq

updated 15.3 years ago by Wolfgang Huber ★ 13k • written 15.3 years ago by Andreia Fonseca ▴ 810

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4.2k

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GO DESeq GO DESeq

updated 15.3 years ago by Naomi Altman ★ 6.0k • written 15.3 years ago by michael watson IAH-C ★ 3.4k

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2.8k

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edgeR DEGseq DESeq edgeR DEGseq DESeq

updated 15.4 years ago by Naomi Altman ★ 6.0k • written 15.4 years ago by michael watson IAH-C ★ 3.4k

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1.4k

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RNASeq DESeq RNASeq DESeq

updated 15.5 years ago by Simon Anders ★ 3.8k • written 15.5 years ago by Andreia Fonseca ▴ 810

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RNASeq DESeq RNASeq DESeq

15.5 years ago Simon Anders ★ 3.8k

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RNASeq DESeq RNASeq DESeq

15.5 years ago Jinfeng Liu ▴ 10

512 results • Page 11 of 11

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

Answer: Gatins Set error by James W. MacDonald 68k

`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.

Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k

Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…

Votes

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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