Showing : deseq • reset
0
votes
17
replies
3.6k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 330
0
votes
3
replies
2.2k
views
DESeq multifactor design paired analysis
DESeq DESeq
12.4 years ago Natasha ▴ 440
0
votes
4
replies
6.0k
views
DESeq Variance Stabilizing Transformation
Clustering DESeq DESeq2 Clustering DESeq DESeq2
updated 12.4 years ago by 43k • written 12.4 years ago by ▴ 50
0
votes
2
replies
1.5k
views
DESeq Normalization Question
Normalization DESeq Normalization DESeq
updated 12.4 years ago by ★ 7.9k • written 12.4 years ago by ▴ 290
0
votes
7
replies
3.4k
views
heatmap with variance stabilizing transformed expression data in DESeq
DESeq DESeq
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 180
0
votes
2
replies
1.3k
views
DEXSeq: subsetting ExonCountSet ?
DESeq DEXSeq DESeq DEXSeq
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 50
0
votes
1
reply
1.0k
views
A few questions about DESeq2 (estimation of dispersion and results table)
DESeq DESeq2 DESeq DESeq2
updated 12.4 years ago by 43k • written 12.4 years ago by ▴ 80
0
votes
1
reply
752
views
FW: DESeq Design (val1 vs mean (val2, val3, val4))
DESeq DESeq
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 20
0
votes
3
replies
3.9k
views
DESeq versus CuffDiff2 for RNA-seq expression quantification in parasite-infected blood
Normalization DESeq DEXSeq Normalization DESeq DEXSeq
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 40
0
votes
0
replies
1.3k
views
RNAseq analyses: to use, or not use, all the samples; that's the question.
PROcess edgeR DESeq PROcess edgeR DESeq
12.5 years ago Aaron Mackey ▴ 200
0
votes
3
replies
4.3k
views
DESeq estimateDispersions
Coverage DESeq Coverage DESeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 330
0
votes
1
reply
1.2k
views
EdgeR- how to work PARTIALLY without replicates
edgeR DESeq edgeR DESeq
updated 12.5 years ago by 53k • written 12.5 years ago by ▴ 10
0
votes
1
reply
3.0k
views
DESeq: computing 95% CI for negative binomial distribution ?
TimeCourse timecourse DESeq TimeCourse timecourse DESeq
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 50
0
votes
1
reply
1.3k
views
DESeq: computing 95% CI for negative binomial distribution ?
DESeq DESeq
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 50
0
votes
0
replies
1.2k
views
deseq2
DESeq DESeq2 DESeq DESeq2
12.5 years ago Michael Love 43k
0
votes
4
replies
9.7k
views
rtracklayer importing gtf files
rtracklayer DESeq GenomicRanges rtracklayer DESeq GenomicRanges
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ★ 13k
0
votes
10
replies
2.6k
views
Multifactor analysis with deseq
Normalization DESeq DESeq2 Normalization DESeq DESeq2
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 420
0
votes
14
replies
3.2k
views
(no subject)
DESeq DESeq
updated 12.5 years ago by ▴ 20 • written 12.6 years ago by ▴ 30
0
votes
5
replies
3.8k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 12.5 years ago by 43k • written 12.6 years ago by ★ 13k
0
votes
7
replies
14k
views
Applying DESeq on RSEM output
edgeR DESeq edgeR DESeq
updated 4.5 years ago by • 0 • written 12.5 years ago by ▴ 30
0
votes
1
reply
1.1k
views
DESeq pairwise comparisons between conditions within a multi-factor design
DESeq DESeq
updated 12.6 years ago by ★ 3.8k • written 12.6 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.6 years ago by ★ 3.8k • written 12.6 years ago by ▴ 330
0
votes
3
replies
17k
views
DESeq - plotPCA
DESeq DESeq
updated 12.6 years ago by ★ 3.8k • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.6k
views
DESeq Design issue
DESeq DESeq
updated 12.7 years ago by ★ 3.8k • written 12.7 years ago by ★ 13k
0
votes
6
replies
2.5k
views
Log transformation and left censoring
limma edgeR DESeq limma edgeR DESeq
updated 12.7 years ago by 53k • written 12.7 years ago by ★ 13k
0
votes
3
replies
1.9k
views
Getting DESEq results on just one gene
DESeq DESeq
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 320
0
votes
3
replies
1.5k
views
DEXSeq: building exon count set
DESeq DEXSeq DESeq DEXSeq
updated 12.7 years ago by ★ 1.9k • written 12.7 years ago by ▴ 140
0
votes
1
reply
1.6k
views
DESeq - working with more than 2 conditions
DESeq DESeq
updated 12.7 years ago by ★ 3.8k • written 12.7 years ago by ▴ 20
0
votes
4
replies
1.2k
views
DESeq package error
DESeq DESeq
updated 12.7 years ago by ★ 8.2k • written 12.7 years ago by ▴ 30
0
votes
1
reply
2.1k
views
GLM in DEseq
DESeq DESeq
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ★ 13k
0
votes
5
replies
2.0k
views
filtering before using DESeq
DESeq DESeq
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 190
0
votes
2
replies
2.7k
views
DESeq and EdgeR log fold differences
Normalization edgeR DESeq Normalization edgeR DESeq
updated 12.8 years ago by 53k • written 12.8 years ago by ▴ 40
0
votes
1
reply
1.7k
views
DESeq: GLM for multi-factor and mulit-level designs
DESeq DESeq
updated 12.9 years ago by ★ 7.9k • written 12.9 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Experimental design with edgeR and DESeq packages (RNA-seq)
edgeR DESeq edgeR DESeq
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 50
0
votes
1
reply
1.0k
views
DESeq not available
DESeq DESeq
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ★ 13k
0
votes
7
replies
5.1k
views
edgeR/DESeq for ChIP-seq analysis
edgeR DESeq edgeR DESeq
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 240
0
votes
6
replies
4.7k
views
Is there any prejudice whether to use edgeR or DESeq for differential expression analysis for RNA Seq data
edgeR DESeq edgeR DESeq
updated 12.9 years ago by ▴ 880 • written 12.9 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Removing overlapping genes from annotation for RNAseq read count
RNASeq Annotation PROcess DESeq RNASeq Annotation PROcess DESeq
12.9 years ago Guest User ★ 13k
2
votes
1
reply
2.2k
views
DESeq package
Proteomics DESeq Proteomics DESeq
updated 13.0 years ago by ▴ 550 • written 13.0 years ago by ▴ 20
0
votes
0
replies
638
views
Multi-factor designs with specific comparisons
DESeq DESeq
13.0 years ago Guest User ★ 13k
0
votes
1
reply
3.7k
views
mixed-effects analysis within DEseq
RNASeq DESeq RNASeq DESeq
updated 13.0 years ago by ▴ 150 • written 13.0 years ago by ▴ 10
0
votes
4
replies
1.7k
views
DESeq diagnostics
RNASeq Normalization DESeq RNASeq Normalization DESeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 100
0
votes
1
reply
2.9k
views
plotPCA error
RNASeq DESeq RNASeq DESeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ★ 13k
0
votes
4
replies
1.5k
views
(no subject)
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
updated 13.0 years ago by ★ 2.0k • written 13.0 years ago by ▴ 100
0
votes
0
replies
1.1k
views
DESeq - skewed MAplots and other problems
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
13.0 years ago Michal Lulu ▴ 100
0
votes
12
replies
3.9k
views
DEseq version and R version compatibility
DESeq DESeq
updated 13.0 years ago by ★ 1.7k • written 13.0 years ago by ▴ 280
0
votes
0
replies
932
views
ANOVA in edgeR?
edgeR DESeq edgeR DESeq
13.0 years ago Gordon Smyth 53k
0
votes
5
replies
1.0k
views
shan
DESeq DESeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ★ 2.0k
0
votes
0
replies
929
views
DESeq plotting graphs.
DESeq DESeq
13.0 years ago PRAVIN ▴ 10
0
votes
2
replies
1.7k
views
DESeq - working with more than 2 conditions
edgeR DESeq edgeR DESeq
updated 13.0 years ago by ▴ 180 • written 13.0 years ago by ▴ 440
512 results • Page 7 of 11
Recent ...
Replies
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Joseph • 0
Popular Question to Gordon Smyth 53k
Popular Question to zhe ▴ 20
Popular Question to Natalia • 0
Locations • All
Pittsburgh, United States, 2 minutes ago
United States, 22 minutes ago
United States, 1 hour ago
The city by the bay, 2 hours ago
Seattle, WA, United States, 2 hours ago
Traffic: 729 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6