Bioconductor Design formula

Showing : design formula • reset

votes

replies

6.5k

views

deseq2 design formula log fold change

updated 3 months ago by Michael Love 43k • written 4.3 years ago by jason.taotaotan ▴ 40

votes

replies

850

views

deseq2 design formula

updated 4.8 years ago by swbarnes2 ★ 1.4k • written 4.8 years ago by tracecakes • 0

vote

replies

1.1k

views

deseq2 rnaseq repeated measures time series design formula

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by Dorien ▴ 10

votes

replies

1.3k

views

deseq2 design design formula time course lrt

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by ac_bioinformatics • 0

votes

replies

918

views

deseq2 design formula design matrix edgeR ATAC

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by corinne_hutfilz • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: pathview - multiple states by Philippine • 0

:D Thank you!!! It works perfectly.

Answer: lfcShrink and alpha value by Michael Love 43k

The code I sent just tells summary what threshold to use when printing the table.

Comment: Crossover design with limma by Marek Gierlinski ▴ 30

Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …

Comment: pathview - multiple states by Guido Hooiveld ★ 4.1k

According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…

Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…

Votes

Answer: Crossover design with limma

Answer: Different PCA results when using rlog and vst transformations

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Awards • All