Bioconductor Dexseq

Showing : dexseq_count • reset

vote

replies

3.6k

views

dexseq dexseq_count genomicfeatures

updated 6.6 years ago by hazards • 0 • written 6.7 years ago by marija.durdevic • 0

votes

938

views

dexseqdatasetfromhtseq dexseq_count dexseq

7.2 years ago komal.rathi ▴ 120

votes

1.7k

views

DEXSeq dexseq_count htseq

7.8 years ago mat.lesche ▴ 110

votes

replies

1.2k

views

dexseq_count dexseq htseqcounts

8.2 years ago as1023 • 0

votes

replies

1.1k

views

dexseq dexseq_count

8.4 years ago wunglee2019 • 0

vote

replies

1.8k

views

DEXSeq warnings dexseq_count

updated 8.6 years ago by Darya Vanichkina ▴ 130 • written 8.6 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

3.3k

views

dexseq_count DEXSeqDataSetFromHTSeq DEXSeq strsplit

updated 8.6 years ago by aditi ▴ 20 • written 8.6 years ago by sakura.nussbaum ▴ 10

7 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Votes

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Awards • All