Bioconductor Dexseq

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dexseq dexseq_count genomicfeatures

updated 6.6 years ago by hazards • 0 • written 6.7 years ago by marija.durdevic • 0

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929

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dexseqdatasetfromhtseq dexseq_count dexseq

7.1 years ago komal.rathi ▴ 120

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DEXSeq dexseq_count htseq

7.7 years ago mat.lesche ▴ 110

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dexseq_count dexseq htseqcounts

8.2 years ago as1023 • 0

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dexseq dexseq_count

8.4 years ago wunglee2019 • 0

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DEXSeq warnings dexseq_count

updated 8.5 years ago by Darya Vanichkina ▴ 130 • written 8.6 years ago by Assa Yeroslaviz ★ 1.5k

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3.3k

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dexseq_count DEXSeqDataSetFromHTSeq DEXSeq strsplit

updated 8.5 years ago by aditi ▴ 20 • written 8.5 years ago by sakura.nussbaum ▴ 10

7 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

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Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

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Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k