Showing : diffBind • reset
2
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[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
27 days ago Henry ▴ 10
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4
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244
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
22 days ago • updated 19 days ago lonn • 0
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3
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188
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
8 days ago • updated 1 day ago Ian D. ▴ 70
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173
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[DiffBind] Obtaining normalization factors
DiffBind
27 days ago • updated 23 days ago Henry ▴ 10
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142
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ATACseq merge peaks
DiffBind
updated 13 days ago by ★ 4.1k • written 15 days ago by • 0
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1
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130
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Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 9 days ago by 42k • written 9 days ago by • 0
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97
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Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
23 days ago Virangika • 0
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81
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dba.plotProfile() plotting and interpretation
DiffBind
6 days ago Henry ▴ 10
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59
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DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
7 days ago yvonneh • 0
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54
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
7 days ago Ian D. ▴ 70
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
2 days ago Dinesh • 0
11 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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