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diffbind
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0
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124
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
4 days ago • updated 3 days ago
Ian D.
▴ 70
2
votes
2
replies
388
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
24 days ago • updated 23 days ago
Henry
▴ 10
0
votes
1
reply
132
views
ATACseq merge peaks
DiffBind
updated 9 days ago by
ATpoint
★ 4.1k • written 11 days ago by
Shloka
• 0
1
vote
1
reply
103
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 5 days ago by
Michael Love
41k • written 5 days ago by
marcusn
• 0
0
votes
0
replies
94
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
20 days ago
Virangika
• 0
0
votes
0
replies
39
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
3 days ago
Ian D.
▴ 70
2
votes
2
replies
171
views
[DiffBind] Obtaining normalization factors
DiffBind
23 days ago • updated 19 days ago
Henry
▴ 10
0
votes
0
replies
44
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
3 days ago
yvonneh
• 0
0
votes
4
replies
236
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
18 days ago • updated 15 days ago
lonn
• 0
0
votes
0
replies
46
views
dba.plotProfile() plotting and interpretation
DiffBind
2 days ago
Henry
▴ 10
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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