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diffbind
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22
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need help with Diffbind multiple groups
DiffBind
ChIPSeqData
22 hours ago
Dinesh
• 0
0
votes
0
replies
66
views
dba.plotProfile() plotting and interpretation
DiffBind
4 days ago
Henry
▴ 10
0
votes
0
replies
51
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
5 days ago
yvonneh
• 0
0
votes
0
replies
46
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
5 days ago
Ian D.
▴ 70
0
votes
2
replies
137
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
6 days ago • updated 5 days ago
Ian D.
▴ 70
1
vote
1
reply
116
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 7 days ago by
Michael Love
42k • written 7 days ago by
marcusn
• 0
0
votes
1
reply
140
views
ATACseq merge peaks
DiffBind
updated 11 days ago by
ATpoint
★ 4.1k • written 13 days ago by
Shloka
• 0
0
votes
4
replies
240
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
20 days ago • updated 17 days ago
lonn
• 0
0
votes
0
replies
96
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
22 days ago
Virangika
• 0
2
votes
2
replies
172
views
[DiffBind] Obtaining normalization factors
DiffBind
25 days ago • updated 21 days ago
Henry
▴ 10
2
votes
2
replies
392
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
26 days ago • updated 25 days ago
Henry
▴ 10
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
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Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
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This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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