updated 21 months ago by
Martin Morgan
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written 21 months ago by
PabloR
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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
Kazuna
•
0
Dear Charles,
I am so impressed the way you handled this! Thank you!
Could you teach me how you created geneSets list? Did you use getgo()…
Answer: Fail to run RupRadar
by
sergisayolspuig
▴
80
Hi Qingwei,
dupRadar is using `Rsubread::featureCounts()` under the hood to count reads on features of the GTF. By default, `Rsubread::fea…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
•
0
Hi Michael,
I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
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