Bioconductor Dupradar

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1.2k

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dupradar rsubread

updated 5.2 years ago by Gordon Smyth 48k • written 5.2 years ago by b.nota ▴ 360

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890

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dupRadar

updated 6.9 years ago by sergisayolspuig ▴ 80 • written 7.4 years ago by Gary ▴ 20

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542

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dupRadar

16 months ago Qingwei • 0

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934

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dupradar

updated 6.9 years ago by sergisayolspuig ▴ 80 • written 7.1 years ago by ekornobis ▴ 10

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661

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dupRadar 150bp RNA-seq

updated 3.1 years ago by sergisayolspuig ▴ 80 • written 3.1 years ago by olegderyagin • 0

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475

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dupRadar

21 months ago Greta • 0

6 results • Page 1 of 1

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Comment: Effect of lfcThreshold on p-value in DESeq2 by camillab. ▴ 10

great so the best approach would be using the lfcThreshold parameter to make sure that both p.value and log2fc are taken into account in t…

Comment: HTSeqGenie runs very slow by zh9118 • 0

I found that it's always the last chunk that took time forever, even though the last chunk is the smallest one. ![enter image description …

Answer: Error MakeOrgPackagefromNCBI by James W. MacDonald 63k

You will rarely find a particular strain in any annotation data, and instead you should use the 'main' taxon ID, which for *A. baumannii* h…

Comment: Setting up a multi-factor experiement by john.briseno • 0

thanks, will do! we work with a non-model organism, but perhaps the folks who do our genomics/sequencing have some input.

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

Answer: Setting up a multi-factor experiement

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

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