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ebarrays
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EBarrays question
EBarrays
EBarrays
13.0 years ago
jgomez@uni-potsdam.de
▴ 30
0
votes
2
replies
791
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Question about Package EBarrays
EBarrays
EBarrays
updated 15.9 years ago by
Sean Davis
21k • written 15.9 years ago by
affy snp
▴ 640
0
votes
2
replies
1.4k
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LIMMA : design (1, 2, 3, 3 ) , I gotEXCITINGresults, what could be the logic, since i h
Microarray
GO
affy
limma
EBarrays
Microarray
GO
affy
limma
EBarrays
updated 19.0 years ago by
Marcus
▴ 150 • written 19.0 years ago by
Marcus Davy
▴ 680
0
votes
3
replies
1.4k
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Recent changes to Bioconductor packages
Microarray
Ruuid
graph
limma
EBarrays
Microarray
Ruuid
graph
limma
EBarrays
20.1 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
3
replies
1.4k
views
utils required for EBarrays
EBarrays
EBarrays
updated 20.1 years ago by
Marcus Davy
▴ 680 • written 20.1 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
0
replies
1.0k
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New packages in BioC
Microarray
EBarrays
Microarray
EBarrays
20.1 years ago
Jeff Gentry
★ 3.9k
6 results • Page
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Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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