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EBarrays question
EBarrays EBarrays
14.6 years ago jgomez@uni-potsdam.de ▴ 30
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Question about Package EBarrays
EBarrays EBarrays
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 640
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LIMMA : design (1, 2, 3, 3 ) , I gotEXCITINGresults, what could be the logic, since i h
Microarray GO affy limma EBarrays Microarray GO affy limma EBarrays
updated 20.5 years ago by ▴ 150 • written 20.5 years ago by ▴ 680
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Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
21.7 years ago • updated 21.6 years ago madman@jimmy.harvard.edu ▴ 850
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utils required for EBarrays
EBarrays EBarrays
updated 21.6 years ago by ▴ 680 • written 21.6 years ago by ▴ 620
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New packages in BioC
Microarray EBarrays Microarray EBarrays
21.7 years ago Jeff Gentry ★ 3.9k
6 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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