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edgeR
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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools
limma
ExpressionData
RNASeq
edgeR
3 days ago • updated 2 days ago
mohammedtoufiq91
▴ 10
2
votes
3
replies
175
views
How to correctly adjust for gender in edgeR
design
glm
edgeR
updated 8 days ago by
Gordon Smyth
50k • written 9 days ago by
Guillermo
• 0
1
vote
3
replies
286
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 9 days ago by
Gordon Smyth
50k • written 10 days ago by
Ashley
• 0
0
votes
1
reply
184
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 21 days ago by
Gordon Smyth
50k • written 22 days ago by
z_bahari
• 0
4
votes
2
replies
651
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
22 days ago • updated 18 days ago
gene_bioconductor
▴ 10
1
vote
2
replies
222
views
Citation for edgeR user guide
edgeR
written 4 weeks ago by
k___
▴ 30
5
votes
3
replies
331
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 14 days ago by
Gordon Smyth
50k • written 5 weeks ago by
Shaimaa Gamal
• 0
7 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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