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ExpressionData
•
reset
0
votes
0
replies
86
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR
ExpressionData
RNASeqData
7 weeks ago
Mafalda
• 0
0
votes
1
reply
80
views
HSMMSingleCell metadata
ExperimentHubData
ExpressionData
CellDataSet
RNASeqData
8 weeks ago
karl.stamm
▴ 10
2
votes
2
replies
195
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression
DESeq2
ExpressionData
updated 8 weeks ago by
fivescarynightsgames
• 0 • written 10 weeks ago by
reza
▴ 10
0
votes
3
replies
239
views
Error in loading data set
ExpressionData
updated 3 months ago by
Basti
▴ 280 • written 3 months ago by
Muhammad
• 0
0
votes
0
replies
142
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
6 months ago
AZ
▴ 30
0
votes
2
replies
304
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
11 months ago
Clara
• 0
3
votes
2
replies
397
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData
ArrayExpress
updated 13 months ago by
Gordon Smyth
45k • written 13 months ago by
Gero
• 0
1
vote
3
replies
382
views
DESeq analysis with Biological replicate.
DESeq2
ExpressionData
GeneExpression
updated 15 months ago by
Michael Love
36k • written 15 months ago by
Javad_Sadeghi
• 0
0
votes
0
replies
338
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
16 months ago
jol.espinoz
▴ 40
0
votes
1
reply
298
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 17 months ago by
Michael Love
36k • written 17 months ago by
Bine
▴ 20
0
votes
0
replies
521
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
13.8 years ago
Gordon Smyth
45k
1
vote
0
replies
536
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
13.9 years ago
Bettina Kulle Andreassen
▴ 20
0
votes
0
replies
735
views
How to display or output expression data with non-unique feature labels?
ExpressionData
ExpressionData
14.9 years ago
Kocherginsky, Masha [BSD] - HSD
▴ 10
0
votes
0
replies
760
views
How to display or output expression data with non-unique feature labels?
Annotation
ExpressionData
Annotation
ExpressionData
14.9 years ago
Martin Morgan
25k
14 results • Page
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Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! I got it now!
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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