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4
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FilterByExpr low counts with small sample size
edgeR
4 weeks ago • updated 28 days ago
Jonathan
▴ 10
1
vote
3
replies
257
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 6 days ago by
Gordon Smyth
50k • written 7 days ago by
Ashley
• 0
5
votes
3
replies
319
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 10 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Shaimaa Gamal
• 0
2
votes
3
replies
140
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How to correctly adjust for gender in edgeR
design
glm
edgeR
updated 5 days ago by
Gordon Smyth
50k • written 5 days ago by
Guillermo
• 0
3
votes
3
replies
370
views
permutation test in edgeR
rna-seq
edgeR
updated 29 days ago by
Gordon Smyth
50k • written 6 weeks ago by
Netanel
• 0
4
votes
2
replies
636
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
18 days ago • updated 14 days ago
gene_bioconductor
▴ 10
1
vote
2
replies
207
views
Citation for edgeR user guide
edgeR
written 27 days ago by
k___
▴ 30
0
votes
1
reply
180
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 18 days ago by
Gordon Smyth
50k • written 18 days ago by
z_bahari
• 0
8 results • Page
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Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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