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320

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limma edgeR RNASeq

updated 11 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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641

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fgsea edgeR

18 days ago • updated 14 days ago gene_bioconductor ▴ 10

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475

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edgeR

4 weeks ago • updated 28 days ago Jonathan ▴ 10

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143

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design glm edgeR

updated 5 days ago by Gordon Smyth 50k • written 5 days ago by Guillermo • 0

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261

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 6 days ago by Gordon Smyth 50k • written 7 days ago by Ashley • 0

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208

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edgeR

written 27 days ago by k___ ▴ 30

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180

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RNASeqData edgeR

updated 18 days ago by Gordon Smyth 50k • written 18 days ago by z_bahari • 0

7 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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