Bioconductor Effect size

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956

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edger effect size cohen d

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by mali salmon ▴ 370

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4.4k

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limma topTable confidence interval effect size microarray

updated 7.6 years ago by Gordon Smyth 48k • written 7.6 years ago by Konstantinos Yeles ▴ 80

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1.0k

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limma microarray effect size

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Moritz E. Beber ▴ 10

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3.6k

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limma effect size

updated 12 months ago by kaiyang • 0 • written 8.1 years ago by January Weiner ▴ 240

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6.7k

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effect size Limma toptable Standard Error

updated 8.2 years ago by Gordon Smyth 48k • written 8.2 years ago by Vani ▴ 20

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

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