Bioconductor Enmix

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2.5k

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ENmix Bioconductor rtracklayer

written 3.2 years ago by lea • 0

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846

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ENmix

updated 3.5 years ago by shepherl 3.9k • written 3.5 years ago by ycding ▴ 10

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980

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ENmix

written 7.7 years ago by avilella ▴ 10

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594

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ENmix

3.5 years ago mwjnorris ▴ 10

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559

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ENmix

3.2 years ago joannew • 0

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696

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ENmix comBat

3.1 years ago joannew • 0

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1.1k

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methylation ENmix BMIQ wateRmelon

5.2 years ago moldach ▴ 20

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664

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ENmix IlluminaHumanMethylationEPICmanifest

updated 24 months ago by shepherl 3.9k • written 24 months ago by Daphna • 0

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1.8k

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

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645

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ENmix

5.2 years ago moldach ▴ 20

10 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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