Bioconductor EnrichPathway

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enrichPathway ReactomePA

updated 2.9 years ago by landenshanie ▴ 40 • written 5.5 years ago by DataFanatic ▴ 10

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DOSE ReactomePA enrichMap enrichPathway

updated 7.7 years ago by Guangchuang Yu ★ 1.2k • written 7.7 years ago by jan.soderman • 0

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

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Comment: Check removeBatchEffect effectiveness

Answer: DESeq2 design for haplotype MPRA

Comment: Check removeBatchEffect effectiveness

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