Showing : ReactomePA • reset
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enrichPathway error when checking condition lengths used
DOSE ReactomePA
7 months ago Lluís Revilla Sancho ▴ 650
3
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4
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277
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Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db ReactomePA
7 months ago florianjt • 0
0
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0
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157
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Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
10 months ago paun_bio • 0
0
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2
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206
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Hightlight genes/metabolites in Pathview and ReactomePA
pathview ReactomePA
updated 15 months ago by 58k • written 15 months ago by • 0
0
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9
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426
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ReactomePA error graph
r rnaseq bulk GO ReactomePA
15 months ago camillab. ▴ 10
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0
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189
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reactomePA error input file
r reactomePA enrichment
updated 15 months ago by 3.4k • written 15 months ago by ▴ 10
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0
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231
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similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
16 months ago jan.soderman • 0
1
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1
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298
views
ReactomePA:enrichPathway error in universe parameter
enrichPathway ReactomePA
updated 17 months ago by 3.4k • written 17 months ago by • 0
0
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8
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649
views
Adding Enrichresults for creating plot
ReactomePA clusterProfiler
17 months ago felix.thaler • 0
0
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1
reply
838
views
How to modify label text size/line width in cnetplot (ReactomePA/clusterProfiler)
clusterProfiler ReactomePA
updated 18 months ago by ★ 1.2k • written 18 months ago by ▴ 10
0
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4
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286
views
How to list all "..." parameters inside R function
ReactomePA clusterProfiler
updated 19 months ago by 58k • written 19 months ago by • 0
0
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2
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654
views
DO.db is missing after repeated installations-ReactomePA-ClusterProfiler-DOSE
software error reactomePA DOSE DO.db there is no package called ‘DO.db’
updated 21 months ago by 25k • written 21 months ago by • 0
0
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0
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281
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ReactomePA only showing 1 result
ReactomePA
2.3 years ago ayang • 0
0
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1
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327
views
ReactomePA and genelist
ReactomePA
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
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0
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310
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viewPathway not showing a gene of interest
ReactomePA
2.6 years ago santos22903 • 0
2
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5
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1.3k
views
How to convert data frame obtained with enrichPathway back to an enrichPathway result after editing/subsetting?
ReactomePA
updated 2.8 years ago by ★ 1.2k • written 2.8 years ago by ▴ 20
1
vote
2
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856
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
3.3 years ago martin.busch • 0
0
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5
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699
views
ReactomePA / Reactome: Crash when plotting
reactomepa reactomepa reactome bioconductor viewpathway reactome.db reactome
3.3 years ago martin.busch • 0
2
votes
4
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826
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 3.3 years ago by ★ 1.2k • written 3.3 years ago by • 0
0
votes
2
replies
836
views
p-values in Reactome and ReactomePA
reactomepa reactome
updated 3.5 years ago by ★ 1.2k • written 3.5 years ago by • 0
3
votes
5
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843
views
ReactomePA - Pathway analysis for DE porcine genes
reactomepa clusterprofiler
3.5 years ago thomasjenner333 • 0
0
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2
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720
views
Reference for edge and node properties suitable for enrichMap{DOSE}
DOSE ReactomePA enrichMap enrichPathway
updated 3.7 years ago by ★ 1.2k • written 3.7 years ago by • 0
0
votes
3
replies
827
views
custom background list for ReactomePA
reactomepa chipseeker Guangchuang Yu
3.7 years ago andrew.gehrke • 0
3
votes
2
replies
2.1k
views
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
reactomepa pathway analysis enrichment analysis clusterprofiler
updated 3.9 years ago by ★ 1.2k • written 3.9 years ago by ▴ 10
3
votes
4
replies
886
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa reactome.db reactome proteomics uniprot accessions
updated 3.9 years ago by ▴ 150 • written 3.9 years ago by ▴ 10
3
votes
1
reply
584
views
ReactomePA enrichMap function - a question regarding the connections between nodes
reactomepa
updated 4.2 years ago by ▴ 650 • written 4.2 years ago by • 0
0
votes
1
reply
756
views
GSEA threshold question
GSEa r clusterprofiler reactomepa
4.3 years ago bhgyu ▴ 30
1
vote
8
replies
987
views
ReactomePA gsePathway - a couple of questions regarding the input and output
reactomepa
4.5 years ago juls • 0
1
vote
1
reply
815
views
ReactomePA viewPathway DE node and legend colour
DOSE ReactomePA
4.7 years ago Kajus Baidžajevas ▴ 10
5
votes
4
replies
924
views
Reactome pathways in ReactomeDB/graphite
reactomepa reactome graphite
updated 4.7 years ago by ▴ 100 • written 4.7 years ago by ▴ 20
0
votes
1
reply
807
views
Dependent library issue when loading ReactomePA
ReactomePA
updated 5.0 years ago by 58k • written 5.0 years ago by • 0
1
vote
1
reply
941
views
how to link ReactomePA with DESeq2
ReactomePA GO
updated 5.0 years ago by ★ 1.2k • written 5.0 years ago by ▴ 10
4
votes
3
replies
961
views
Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 5.1 years ago by ★ 1.2k • written 5.1 years ago by ▴ 570
0
votes
1
reply
795
views
ReactomePA - Change colors in barplot
reactomepa
updated 5.1 years ago by ★ 1.2k • written 5.1 years ago by ▴ 860
0
votes
14
replies
1.8k
views
Error in ReactomePA
r reactomepa
updated 5.2 years ago by ★ 1.2k • written 5.2 years ago by ▴ 20
1
vote
3
replies
1.5k
views
Reactome pathway analysis using ReactomePA
reactomepa R bioconductor ReactomePA
updated 5.9 years ago by ▴ 10 • written 6.0 years ago by ▴ 10
2
votes
4
replies
1.5k
views
ReactomePA : error with gsePathway
ReactomePA gsePathway
updated 6.5 years ago by ★ 1.2k • written 6.5 years ago by ▴ 140
37 results • Page 1 of 1
Recent ...
Replies
Comment: ggtree install by bjarke ▴ 10
Excellent! Many thanks Mike.
Answer: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k
The issue you are having is the same as trying to solve this equation: ``` 3 = y + x ``` There are infinite values of x and y for …
Answer: ggtree install by Mike Smith ★ 5.1k
I think the easiest solution would be to update your version of R to the latest (4.1.1) and then reinstall the ggtree package. The reaso…
Comment: Gradient dotplot by Robert Ivanek ▴ 690
But this a bit "hackish" solution might work for you. It takes advantage of `groups` which are defined as separate columns. ``` library(R…
Comment: Gradient dotplot by Robert Ivanek ▴ 690
It is not possible to color the points in a `DataTrack` based on a continuous variable at the moment.
Votes
Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
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Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
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