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enrichkegg
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13
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4.7k
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KEGG enrichment in R and gene IDs
KEGG
enrichKEGG
R
entrezid
13 months ago
Laia
▴ 10
1
vote
2
replies
3.7k
views
cnetplot with enrichKEGG results
clusterProfiler
enrichKEGG
cnetplot
2.4 years ago
fatimaruizdelabastida
• 0
2
votes
4
replies
3.0k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler
kaas
enrichKEGG
updated 6.8 years ago by
renuka.nayak
• 0 • written 7.7 years ago by
googneed
• 0
2
votes
1
reply
2.1k
views
enrichKEGG
clusterProfiler
enrichKEGG
updated 2.0 years ago by
Guido Hooiveld
★ 3.9k • written 2.0 years ago by
blim4
• 0
0
votes
1
reply
1.5k
views
ClusterProfiler - enrichKEGG on specific pathways
kegg
enrichkegg
clusterprofiler
updated 5 months ago by
EvaLan
• 0 • written 5.8 years ago by
bekah
▴ 40
0
votes
0
replies
1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.2 years ago
yurigorelik
▴ 10
0
votes
0
replies
743
views
clusterProfiler GeneRatio minGSSize
enrichKEGG
GeneRatio
5.2 years ago
zhang.jianhai
▴ 10
2
votes
2
replies
252
views
Error in enrichKEGG for a model organism
enrichKEGG
KEGGgraph
KEGG
updated 10 weeks ago by
Guido Hooiveld
★ 3.9k • written 10 weeks ago by
cinzia.spagnoli
• 0
8 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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