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enrichplot
•
reset
2
votes
2
replies
245
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
5 weeks ago
Eva
▴ 10
2
votes
6
replies
978
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
3 months ago • updated 9 weeks ago
Tobias
• 0
2
votes
4
replies
1.5k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot
clusterProfiler
11 months ago
Tyroone
• 0
0
votes
0
replies
347
views
HeatPlot - Genes selections
enrichplot
stringr
heatplot
7 months ago
ruba-mahmoud
• 0
0
votes
3
replies
1.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot
GSEA
clusterProfiler
updated 6 months ago by
Fatemeh
• 0 • written 8 months ago by
Cen
• 0
0
votes
5
replies
1.0k
views
plot enrichment results
enrichplot
clusterProfiler
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 10 months ago by
Manuela
• 0
0
votes
5
replies
2.0k
views
How can I limit the number of displayed genes in heatplot
heatplot
enrichplot
updated 7 months ago by
ruba-mahmoud
• 0 • written 16 months ago by
Melanie
• 0
0
votes
2
replies
592
views
enrichPlot error when plotting topGO results
topGO
enrichplot
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
nromerov
• 0
0
votes
1
reply
137
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 12 days ago by
Guido Hooiveld
★ 3.9k • written 16 days ago by
Lucie
• 0
0
votes
1
reply
237
views
visualizing GSEA showCategory question
enrichplot
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Grace.Ciabattoni
• 0
10 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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